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Banks, Michael A., and W. Eichert. "WHICHRUN (version 3.2) a computer program for population assignment of individuals based on multilocus genotype data." Journal of Heredity 91, no. 1 (2000): 87-89.
Banks, Michael A., and David P. Jacobson. Which genetic markers and GSI methods are more appropriate for defining marine distribution and migration of salmon? In Workshop on Application of Stock Identification in Defining Marine Distribution and Migration of Salmon : Honolulu, Hawaii, USA [abstracts], Edited by J. Irvine, L. Seeb, S. Urawa, N. Varnavskaya and R. Wilmot. Technical report /North Pacific Anadromous Fish Commission. North Pacific Anadromous Fish Commission, 2003.
Banks, Michael A., W. Eichert, and J. B. Olson. "Which genetic loci have greater population assignment power?" Bioinformatics 19, no. 11 (2003): 1436-1438.
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Satterthwaite, W. H., M. S. Mohr, M. R. O'Farrell, E. C. Anderson, Michael A. Banks, S. J. Bates, Renee M. Bellinger, L. A. Borgerson, E. D. Crandall, J. C. Garza et al. "Use of genetic stock identification data for comparison of the ocean spatial distribution, size at age, and fishery exposure of an untagged stock and its indicator: California coastal versus Klamath River Chinook salmon." Transactions of the American Fisheries Society 143, no. 1 (2014): 117-133.
Banks, Michael A., Michael S. Blouin, Gregory R. Moyer, Véronique Thériault, Amelia C. Whitcomb, David Loomis, and Laura S. Jackson. Umpqua Coho Salmon Genetic Pedigree [dataset]. Corvallis, 2013.
Banks, Michael A., Michael S. Blouin, Gregory R. Moyer, Véronique Thériault, Amelia C. Whitcomb, David Loomis, and Laura S. Jackson. Umpqua Coho Salmon Genetic Pedigree, Edited by Oregon State Univ Dataset. Department of Fisheries and Wildlife, Hatfield Marine Science Center, Coastal Oregon Marine Experiment Station,, 2013.
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Banks, Michael A., David P. Jacobson, Isabelle Meusnier, Carolyn A. Greig, Vanessa K. Rashbrook, William R. Ardren, Christian T. Smith, Jeremiah Bernier-Latmani, John Van Sickle, and Kathleen G. O'Malley. "Testing advances in molecular discrimination among Chinook salmon life histories: evidence from a blind test." Animal Genetics 45, no. 3 (2014): 412-420.
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Thériault, Véronique, G. R. Moyer, and Michael A. Banks. "Survival and life history characteristics among wild and hatchery coho salmon (Oncorhynchus kisutch) returns: how do unfed fry differ from smolt releases?" Canadian Journal of Fisheries and Aquatic Sciences 67, no. 3 (2010): 486-497.
Banks, Michael A.. "Stock identification for the conservation of threatened or endangered species." In Stock identification methods, edited by S. X. Cadrin, 609-629. Stock identification methods. Burlington, MA: Elsevier Academic Press, 2005.
"A simulation approach of population differentiation and individual assignment to assess the relevance of special genetic data among rockfish." In Biology, Assessment, and Management of North Pacific Rockfishes : 23rd Lowell Wakefield Fisheries Symposium : Proceedings of the Symposium, edited by Daniel Gomez-Uchida, Michael A. Banks, J. Heifetz, A. J. DiCosimo, M. S. Gharrett, V. M. O'Connell and R. D. Stanley. Fairbanks, Alaska, 2005.
Johnson, Marc A., and Michael A. Banks. "Sequence conservation among orthologous vomeronasal type 1 receptor-like (ora) genes does not support the differential tuning hypothesis in Salmonidae." Gene 485, no. 1 (2011): 16-21.
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Thériault, Véronique, Gregory R. Moyer, L. S. Jackson, M. S. Blouin, and Michael A. Banks. "Reduced reproductive success of hatchery coho salmon in the wild: insights into most likely mechanisms." Molecular Ecology 20, no. 9 (2011): 1860-1869.
Greig, C., J. M. Robertson, and Michael A. Banks. "Rapid PCR-based species tests for threatened sympatric salmonids." Conservation Genetics 3 (2002): 83-86.
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Harvey, B. N., David P. Jacobson, and Michael A. Banks. "Quantifying the uncertainty of a juvenile Chinook salmon race identification method for a mixed-race stock." North American Journal of Fisheries Management 34, no. 6 (2014): 1177-1186.
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Stick, David A., Christopher J. Langdon, Michael A. Banks, and Mark D. Camara. "Preliminary analyses of genetic structure within and among remnant populations of the Olympia oyster, Ostrea conchaphila [abstract only]." Journal of Shellfish Research 27, no. 2 (2008): 471-472.
Baldwin, Rebecca E. B., M. B. Rew, Mattias L. Johansson, Michael A. Banks, and Kym C. Jacobson. "Population structure of three species of Anasakis nematodes recovered from Pacific sardines (Sardinops sagax) distributed throughout the California Current system." Journal of Parasitology 97, no. 4 (2011): 545-554.
Matson, Sean E., Mark D. Camara, Will Eichert, and Michael A. Banks. "P-LOCI: a computer program for choosing the most efficient set of loci for parentage assignment." Molecular Ecology Resources 8, no. 4 (2008): 711-945.
Kvitrud, M. A., S. D. Riemer, R. F. Brown, Renee M. Bellinger, and Michael A. Banks. "Pacific harbor seals (Phoca vitulina) and salmon: genetics presents hard numbers for elucidating predator-prey dynamics." Marine Biology 147, no. 6 (2005): 1459-1466.
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Matson, Sean E., Mark D. Camara, Michael A. Banks, and W. Eichert. "Oyster breeding mixed up: A new spin on old science [abstract only]." Journal of Shellfish Research 27, no. 2 (2008): 471.
Johansson, Mattias L., and Michael A. Banks. "Olfactory receptor related to Class A, Type 2 (V1r-Like Ora2) genes are conserved between distantly related rockfishes (Genus Sebastes)." Journal of Heredity 102, no. 1 (2011): 113-117.
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Stick, David A., Christopher J. Langdon, Michael A. Banks, and Mark D. Camara. "Nineteen novel microsatellite markers for the Olympia oyster, Ostrea conchaphila/lurida." Molecular Ecology Resources 9, no. 1 (2009): 153-155.
Grieg, C., David P. Jacobson, and Michael A. Banks. "New tetranucleotide microsatellites for fine-scale discrimination among endangered Chinook salmon Oncorhynchus tshawytscha." Molecular Ecology Notes 3 (2003): 276-279.
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Johansson, Mattias L., Angela L. Sremba, Leah R. Feinberg, Michael A. Banks, and William T. Peterson. "The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschii sequenced using 454 next-generation sequencing, with a phylogenetic analysis of their position in the Malacostracan family tree." Molecular Biology Reports 39, no. 9 (2012): 9009-9021.
Olsen, J. B., P. Bentzen, Michael A. Banks, J. B. Shaklee, and S. Young. "Microsatellites reveal population identity of individual pink salmon to allow supportive breeding of a population at risk of extinction." Transactions of the American Fisheries Society 129, no. 1 (2000): 232-242.
Gomez-Uchida, Daniel, E. A. Hoffman, W. R. Arden, and Michael A. Banks. "Microsatellite markers for the heavily exploited canary Sebastes pinniger and other rockfish species." Molecular Ecology Notes 3 (2003): 387-389.

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