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Ryer, Cliff H., W. C. Long, Mara L. Spencer, and Paul Iseri. "Depth distribution, habitat associations, and differential growth of newly settled southern Tanner crab (Chionoecetes bairdi) in embayments around Kodiak Island, Alaska." Fishery Bulletin 113, no. 3 (2015): 256-269.
Ryer, Clifford H., C. S. Rose, and Paul J. Iseri. "Flatfish herding behavior in response to trawl sweeps: a comparison of diel responses to conventional sweeps and elevated sweeps." Fishery Bulletin 108, no. 2 (2010): 145-154.
Ryer, Clifford H.. "Laboratory evidence for behavioural impairment of fish escaping trawls: a review." ICES Journal of Marine Science 61, no. 7 (2004): 1157-1164.
Ryer, Clifford H., Michele Ottmar, Mara L. Spencer, J. D. Anderson, and D. Cooper. "Temperature-dependent growth of early juvenile southern Tanner crab Chionoecetes bairdi: Implications for cold pool effects and climate change in the southeastern Bering Sea." Journal of Shellfish Research 35, no. 1 (2016): 259-267.
Ryer, Clifford H., A. Lawton, R. J. Lopez, and Bori L. Olla. "A comparison of the functional ecology of visual vs. nonvisual foraging in two planktivorous marine fishes." Canadian Journal of Fisheries and Aquatic Sciences 59, no. 8 (2002): 1305-1314.
Ryer, Clifford H., Stoner Allan W, Mara L. Spencer, and A. A. Abookire. "Presence of larger flatfish modifies habitat preference by Age-0 northern rock sole Lepidopsetta polyxystra." Marine Ecology Progress Series 342 (2007): 227-238.
Ryer, Clifford H.. "A review of flatfish behavior relative to trawls." Fisheries Research 90, no. 1-3 (2008): 138-146.
Ryer, Clifford H., and Bori L. Olla. "The influence of food distribution upon the development of aggressive and competitive behaviour in juvenile chum salmon, Oncorhynchus keta." Journal of Fish Biology 46, no. 2 (1995): 264-272.
Ryer, Clifford H., Benjamin J. Laurel, and Allan W. Stoner. "Testing the shallow water refuge hypothesis in flatfish nurseries." Marine Ecology Progress Series 415 (2010): 275-282.
Ryer, Clifford H.. "Trawl stress and escapee vulnerability to predation in juvenile walleye pollock: is there an unobserved bycatch of behaviorally impaired escapees?" Marine Ecology Progress Series 232 (2002): 269-279.
Ryer, Clifford H., Allan W. Stoner, and Richard H. Titgen. "Behavioral mechanisms underlying the refuge value of benthic habitat structure for two flatfishes with differing anti-predator strategies." Marine Ecology Progress Series 268 (2004): 231-243.
Ryer, Clifford H., and Bori L. Olla. "Influences of food distribution on fish foraging behaviour." Animal Behaviour 49, no. 2 (1995): 411-418.
Ryer, Clifford H., Allan W. Stoner, Paul J. Iseri, and Mara L. Spencer. "Effects of simulated underwater vehicle lighting on fish behavior." Marine Ecology-Progress Series 391 (2009): 97-106.
Ryer, Clifford H., and Bori L. Olla. "Social facilitation and inhibition of feeding in juvenile chum salmon Oncorhynchus keta." American Zoologist 28 (1988): A155.
Ryer, Clifford H., and Bori L. Olla. "Altered search speed and growth: social versus independent foraging in two pelagic juvenile fishes." Marine Ecology Progress Series 153 (1997): 273-281.
Ryer, Clifford H., and Bori L. Olla. "Social mechanisms facilitating exploitation of spatially variable ephemeral food patches in a pelagic marine fish." Animal Behaviour 44, no. 1 (1992): 69-74.
Ryer, Clifford H., and Bori L. Olla. "Light-induced changes in the prey consumption and behaviour of two juvenile planktivorous fish." Marine Ecology Progress Series 181 (1999): 41-51.
Ryer, Clifford H., and R. J. Orth. "Feeding ecology of the northern pipefish, Syngnathus fuscus, in a seagrass community of the lower Chesapeake Bay." Estuaries 10, no. 4 (1987): 330-336.
Ryer, Clifford H., and Bori L. Olla. "Social behavior of juvenile chum salmon, Oncorhynchus keta, under risk of predation: the influence of food distribution." Environmental Biology of Fishes 45, no. 1 (1996): 75-83.
Ryer, Clifford H., and Bori L. Olla. "Agonistic behavior in a schooling fish: forms, function, and ontogeny." Environmental Biology of Fishes 31, no. 4 (1991): 355-363.
Ryer, Clifford H., and Bori L. Olla. "Shifting the balance between foraging and predator avoidance: the importance of food distribution for a schooling pelagic forager." Environmental Biology of Fishes 52, no. 4 (1998): 467-475.
Ryer, Clifford H., Michele L. Ottmar, and Erick A. Sturm. "Behavioral impairment after escape from trawl codends may not be limited to fragile fish species." Fisheries Research 66, no. 2-3 (2004): 261-269.
Ryer, Clifford H., and Bori L. Olla. "Avoidance of an approaching net by juvenile walleye pollock Theragra chalcogramma in the laboratory: the influence of light intensity." Fisheries Research 45 (2000): 195-199.
Ryer, Clifford H.. "Pipefish foraging: effects of fish size, prey size and altered habitat complexity." Marine Ecology Progress Series 48, no. 1 (1988): 37-45.
Ryer, Clifford H., K. S. Boersma, and Thomas P. Hurst. "Growth and distributional correlates of behavior in three co-occurring juvenile flatfishes." Marine Ecology Progress Series 460 (2012): 183-193.

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